Index

A | C | F | G | H | I | L | M | N | P | R | S | T | W

A

all_ISI (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)

C

compute_overlap() (in module neurodynex.hopfield_network.pattern_tools)
compute_overlap_list() (in module neurodynex.hopfield_network.pattern_tools)
compute_overlap_matrix() (in module neurodynex.hopfield_network.pattern_tools)
create_all_off() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_all_on() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_checkerboard() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_L_pattern() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_random_pattern() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_random_pattern_list() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
create_row_patterns() (neurodynex.hopfield_network.pattern_tools.PatternFactory method)
CV (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)

F

filter_spike_trains() (in module neurodynex.tools.spike_tools)
filtered_spike_trains (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)
flip_n() (in module neurodynex.hopfield_network.pattern_tools)

G

get_averaged_single_neuron_power_spectrum() (in module neurodynex.tools.spike_tools)
get_fixed_point() (in module neurodynex.phase_plane_analysis.fitzhugh_nagumo)
get_neuron_type() (neurodynex.neuron_type.neurons.NeuronAbstract method)
get_noisy_copy() (in module neurodynex.hopfield_network.pattern_tools)
get_pattern_diff() (in module neurodynex.hopfield_network.pattern_tools)
get_population_activity_power_spectrum() (in module neurodynex.tools.spike_tools)
get_ramp_current() (in module neurodynex.tools.input_factory)
get_random_param_set() (in module neurodynex.leaky_integrate_and_fire.LIF)
get_sinusoidal_current() (in module neurodynex.tools.input_factory)
get_spike_stats() (in module neurodynex.tools.spike_tools)
get_spike_time() (in module neurodynex.tools.spike_tools)
get_spike_train_stats() (in module neurodynex.tools.spike_tools)
get_spikes_current() (in module neurodynex.tools.input_factory)
get_step_current() (in module neurodynex.tools.input_factory)
get_trajectory() (in module neurodynex.phase_plane_analysis.fitzhugh_nagumo)
get_zero_current() (in module neurodynex.tools.input_factory)
getting_started() (in module neurodynex.adex_model.AdEx)
(in module neurodynex.brunel_model.LIF_spiking_network)
(in module neurodynex.cable_equation.passive_cable)
(in module neurodynex.exponential_integrate_fire.exp_IF)
(in module neurodynex.hodgkin_huxley.HH)
(in module neurodynex.leaky_integrate_and_fire.LIF)
(in module neurodynex.neuron_type.neurons)
(in module neurodynex.tools.input_factory)

H

HopfieldNetwork (class in neurodynex.hopfield_network.network)

I

iterate() (neurodynex.hopfield_network.network.HopfieldNetwork method)

L

learn() (in module neurodynex.ojas_rule.oja)
load_alphabet() (in module neurodynex.hopfield_network.pattern_tools)

M

make_cloud() (in module neurodynex.ojas_rule.oja)
mean_isi (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)

N

neurodynex (module)
neurodynex.adex_model (module)
neurodynex.adex_model.AdEx (module)
neurodynex.brunel_model (module)
neurodynex.brunel_model.LIF_spiking_network (module)
neurodynex.cable_equation (module)
neurodynex.cable_equation.passive_cable (module)
neurodynex.exponential_integrate_fire (module)
neurodynex.exponential_integrate_fire.exp_IF (module)
neurodynex.hodgkin_huxley (module)
neurodynex.hodgkin_huxley.HH (module)
neurodynex.hopfield_network (module)
neurodynex.hopfield_network.demo (module)
neurodynex.hopfield_network.network (module)
neurodynex.hopfield_network.pattern_tools (module)
neurodynex.hopfield_network.plot_tools (module)
neurodynex.leaky_integrate_and_fire (module)
neurodynex.leaky_integrate_and_fire.LIF (module)
neurodynex.neuron_type (module)
neurodynex.neuron_type.neurons (module)
neurodynex.ojas_rule (module)
neurodynex.ojas_rule.oja (module)
neurodynex.phase_plane_analysis (module)
neurodynex.phase_plane_analysis.fitzhugh_nagumo (module)
neurodynex.test (module)
neurodynex.test.test_AdEx (module)
neurodynex.test.test_cable_equation (module)
neurodynex.test.test_exponential_IF (module)
neurodynex.test.test_HH (module)
neurodynex.test.test_hopfield (module)
neurodynex.test.test_LIF (module)
neurodynex.test.test_LIF_spiking_network (module)
neurodynex.test.test_nagumo (module)
neurodynex.test.test_neuron_type (module)
neurodynex.test.test_oja (module)
neurodynex.test.test_spike_tools (module)
neurodynex.tools (module)
neurodynex.tools.input_factory (module)
neurodynex.tools.plot_tools (module)
neurodynex.tools.spike_tools (module)
NeuronAbstract (class in neurodynex.neuron_type.neurons)
neurontype_random_reassignment() (in module neurodynex.neuron_type.neurons)
NeuronX (class in neurodynex.neuron_type.neurons)
NeuronY (class in neurodynex.neuron_type.neurons)
nr_neurons (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)
nr_spikes (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)
nrOfNeurons (neurodynex.hopfield_network.network.HopfieldNetwork attribute)

P

PatternFactory (class in neurodynex.hopfield_network.pattern_tools)
plot_adex_state() (in module neurodynex.adex_model.AdEx)
plot_data() (in module neurodynex.hodgkin_huxley.HH)
(in module neurodynex.neuron_type.neurons)
plot_flow() (in module neurodynex.phase_plane_analysis.fitzhugh_nagumo)
plot_ISI_distribution() (in module neurodynex.tools.plot_tools)
plot_network_activity() (in module neurodynex.tools.plot_tools)
plot_nework_weights() (in module neurodynex.hopfield_network.plot_tools)
plot_oja_trace() (in module neurodynex.ojas_rule.oja)
plot_overlap_matrix() (in module neurodynex.hopfield_network.plot_tools)
plot_pattern() (in module neurodynex.hopfield_network.plot_tools)
plot_pattern_list() (in module neurodynex.hopfield_network.plot_tools)
plot_population_activity_power_spectrum() (in module neurodynex.tools.plot_tools)
plot_ramp_current_example() (in module neurodynex.tools.input_factory)
plot_sinusoidal_current_example() (in module neurodynex.tools.input_factory)
plot_spike_train_power_spectrum() (in module neurodynex.tools.plot_tools)
plot_state_sequence_and_overlap() (in module neurodynex.hopfield_network.plot_tools)
plot_step_current_example() (in module neurodynex.tools.input_factory)
plot_voltage_and_current_traces() (in module neurodynex.tools.plot_tools)
PopulationSpikeStats (class in neurodynex.tools.spike_tools)
pretty_print_spike_train_stats() (in module neurodynex.tools.spike_tools)
print_default_parameters() (in module neurodynex.leaky_integrate_and_fire.LIF)
print_obfuscated_parameters() (in module neurodynex.leaky_integrate_and_fire.LIF)

R

reset_weights() (neurodynex.hopfield_network.network.HopfieldNetwork method)
reshape_patterns() (in module neurodynex.hopfield_network.pattern_tools)
(neurodynex.hopfield_network.pattern_tools.PatternFactory method)
run() (neurodynex.hopfield_network.network.HopfieldNetwork method)
(neurodynex.neuron_type.neurons.NeuronAbstract method)
run_demo() (in module neurodynex.hopfield_network.demo)
run_hf_demo() (in module neurodynex.hopfield_network.demo)
run_hf_demo_alphabet() (in module neurodynex.hopfield_network.demo)
run_nose() (in module neurodynex.test)
run_oja() (in module neurodynex.ojas_rule.oja)
run_with_monitoring() (neurodynex.hopfield_network.network.HopfieldNetwork method)

S

set_dynamics_sign_async() (neurodynex.hopfield_network.network.HopfieldNetwork method)
set_dynamics_sign_sync() (neurodynex.hopfield_network.network.HopfieldNetwork method)
set_dynamics_to_user_function() (neurodynex.hopfield_network.network.HopfieldNetwork method)
set_state_from_pattern() (neurodynex.hopfield_network.network.HopfieldNetwork method)
simulate_AdEx_neuron() (in module neurodynex.adex_model.AdEx)
simulate_brunel_network() (in module neurodynex.brunel_model.LIF_spiking_network)
simulate_exponential_IF_neuron() (in module neurodynex.exponential_integrate_fire.exp_IF)
simulate_HH_neuron() (in module neurodynex.hodgkin_huxley.HH)
simulate_LIF_neuron() (in module neurodynex.leaky_integrate_and_fire.LIF)
simulate_passive_cable() (in module neurodynex.cable_equation.passive_cable)
simulate_random_neuron() (in module neurodynex.leaky_integrate_and_fire.LIF)
state (neurodynex.hopfield_network.network.HopfieldNetwork attribute)
std_isi (neurodynex.tools.spike_tools.PopulationSpikeStats attribute)
store_patterns() (neurodynex.hopfield_network.network.HopfieldNetwork method)

T

test_filter_spike_trains() (in module neurodynex.test.test_spike_tools)
test_LIF_spiking_network() (in module neurodynex.test.test_LIF_spiking_network)
test_load_alphabet() (in module neurodynex.test.test_hopfield)
test_neurons_run() (in module neurodynex.test.test_neuron_type)
test_neurons_type() (in module neurodynex.test.test_neuron_type)
test_oja() (in module neurodynex.test.test_oja)
test_overlap() (in module neurodynex.test.test_hopfield)
test_pattern_factory() (in module neurodynex.test.test_hopfield)
test_runnable_get_fixed_point() (in module neurodynex.test.test_nagumo)
test_runnable_get_trajectory() (in module neurodynex.test.test_nagumo)
test_simulate_exponential_IF_neuron() (in module neurodynex.test.test_AdEx)
(in module neurodynex.test.test_exponential_IF)
test_simulate_HH_neuron() (in module neurodynex.test.test_HH)
test_simulate_LIF_neuron() (in module neurodynex.test.test_LIF)
test_simulate_passive_cable() (in module neurodynex.test.test_cable_equation)

W

weights (neurodynex.hopfield_network.network.HopfieldNetwork attribute)